ABOUT THIS RECORDspecies: Panicum virgatum
miRNA family: MIRf917
source: miRNEST
Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCTCACTCTCTTCTGTCAGCC miRNA* CTGACAGAGAGAGAAGTGAGCAC mismatches: 1 bulges: 2 |
pre-miRNA
CGAGGAGGATAGCTGACAGAGAGAGAAGTGAGCACGCAACAGCAGCTGCATCTAGGCCTGCATCCATCCACCCCCGCGTATTCAGAATTTCAGATACAGT
CTGGCCGCTGCATGCTCACTCTCTTCTGTCAGCCACAGCACAC
dot-bracket secondary structure
...........(((((((((.(((((.(((((((.......(((((.((.(((.((..(((..............)))..)).)))....(((((...))
))))).))))).)))))))))))))))))))))..........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CGAGGAGGATAGCTGACAGAGAGAGAAGTGAGCACGCAACAGCAGCTGCATCTAGGCCTGCATCCATCCACCCCCGCGTATTCAGAATTTCAGATACAGT
CTGGCCGCTGCATGCTCACTCTCTTCTGTCAGCCACAGCACAC
dot-bracket secondary structure
...........(((((((((.(((((.(((((((.......(((((.((.(((.((..(((..............)))..)).)))....(((((...))
))))).))))).)))))))))))))))))))))..........
SIMILARITIES| miRBase zma-MIR156f: 0.00000000000003 PMRD zma-miR156f: 0.00000000000003 microPC miR156: 0.0000005 | UniProt no hits RFAM mir-156: 0.000000000002 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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