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ABOUT THIS RECORD
ID:
MNEST001716
species:
Panicum virgatum
miRNA family:
MIRf1565
source:
miRNEST
Taxonomy by NCBI:
Panicum virgatum
Panicum
Paniceae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GACGACGACGTACTTGCCCTT
miRNA*
GGGCAGGAGGCAGTCGTCGTCTC
mismatches:
2
bulges:
2
View larger
pre-miRNA
CCAGTGCTCGAG
GGGCAGGAGGCAGTCGTCGTCTC
CTCTGGACTTCATGCTGGCGACGGAGTCAGAGGCAATGCCGTG
GACGACGACGTACTTGCCCTT
C
TCGACGCC
dot-bracket secondary structure
...(((.(((((
(((((((..((.(((((((((((
(((((.(((((...........))))))))))).........)
))))))))))).)))))))).
.
))))))).
SIMILARITIES
miRBase
no hits
PMRD
osa-miRf11267-akr
:
2e-24
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record