miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



ABOUT THIS RECORD

ID: MNEST001739
species: Panicum virgatum
miRNA family: MIR169
source: miRNEST

Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TAGCCAAGAATGACTTGCCTA

miRNA*
 GCAAGCATTCTGGTTAAG

mismatches: 1
bulges: 2
View larger
pre-miRNA
 TGTTGATGAGGGAGGGAGGCCTTACATGGCGATGAAGAGCCTTATCTCCCTTAGCCAAGAATGACTTGCCTATCTCTACTATTTGGTCCATCTGGGAGCC
TTCTTATGATGGATGAAAGGTGGATGATGGCAAGCATTCTGGTTAAGCGAGTGATTCTCTTCCACCATGCTAGGCTAACCCTCTTTCTAATCCTC

dot-bracket secondary structure
.......(((((((((.(((((..(((((....((((((..(((.(((.((((((((.(((((.((((((.(((((((((.(((.((((((((((((...
.))))).))))))).))))))))).)))))))))))))))))))))).))))))..))))))..)))))..)))))..)))))))))........


SIMILARITIES
miRBase zma-MIR169q: 0.0000000002

PMRD osa-miR1430: 0.0000000007

microPC miR1430: 0.0000000007		UniProt no hits

RFAM MIR169_5: 0.0007		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;