ABOUT THIS RECORDspecies: Panicum virgatum
miRNA family: MIR169
source: miRNEST
Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGACTTGCCTG miRNA* GGCAGTCTCCTTGGCTAGC mismatches: 0 bulges: 2 |
pre-miRNA
GATGGTAGTAAAGAGAGCAAGGCTTACATGGCGATGAGGGTTTAGCTCTGGTAGCCAAGGATGACTTGCCTGTGTCGGCGCGGCCTCTCTCCCTGAAGGA
TCGGCGTCACCTTCAGAGCTGAGGATGATCGATAGATGAGCCTTCGGGTAGTGGTCGGTTATCACGGGCAGTCTCCTTGGCTAGCCTGGCTCGCTCTCCT
CGCTCATGCTAGCCTTGGATCATCTCTCGATCT
dot-bracket secondary structure
...........(((((.(((((((..((((((((.((((((..((((..((((((((((((.((((.(((((((..(((.(((((...((.((((((((.
(((.(((((.(((((....))))).))).)).....))).)))))))).)).))))))))..))))))))))))))))))))).)).)))).)))))).)
))).))))..))))))).....)))))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GATGGTAGTAAAGAGAGCAAGGCTTACATGGCGATGAGGGTTTAGCTCTGGTAGCCAAGGATGACTTGCCTGTGTCGGCGCGGCCTCTCTCCCTGAAGGA
TCGGCGTCACCTTCAGAGCTGAGGATGATCGATAGATGAGCCTTCGGGTAGTGGTCGGTTATCACGGGCAGTCTCCTTGGCTAGCCTGGCTCGCTCTCCT
CGCTCATGCTAGCCTTGGATCATCTCTCGATCT
dot-bracket secondary structure
...........(((((.(((((((..((((((((.((((((..((((..((((((((((((.((((.(((((((..(((.(((((...((.((((((((.
(((.(((((.(((((....))))).))).)).....))).)))))))).)).))))))))..))))))))))))))))))))).)).)))).)))))).)
))).))))..))))))).....)))))......
SIMILARITIES| miRBase osa-MIR169h: 0.0000000000008 PMRD osa-miR169h: 0.0000000000008 microPC miR169: 0.0000008 | UniProt no hits RFAM MIR169_5: 0.00000000000002 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
