ABOUT THIS RECORDspecies: Panicum virgatum
miRNA family: MIR169
source: miRNEST
Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGACTTGCCTG miRNA* GGCAGTATCCTTGGCTAGC mismatches: 1 bulges: 2 |
pre-miRNA
AGGGGAGGCCTTGCATGGTGAAAAGAGCTGCCCATCCTGGTAGCCAAGGATGACTTGCCTGTGTACTCGCTCGCTTGTTTGTATGTTGTTGGGGCAGGCA
GGCAACTGATCTCATAGGCAGTATCCTTGGCTAGCCCGGATGGTTCTTATCCTTCATGCCAGGCCTTCACCG
dot-bracket secondary structure
.((((((((((.((((((.((.(((((....((((((.((((((((((((((...((((((((...(((...((((((((((...........)))))))
)))...)))...)))))))).)))))))))))).)).))))))))))).))..)))))).)))))))).)).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGGGGAGGCCTTGCATGGTGAAAAGAGCTGCCCATCCTGGTAGCCAAGGATGACTTGCCTGTGTACTCGCTCGCTTGTTTGTATGTTGTTGGGGCAGGCA
GGCAACTGATCTCATAGGCAGTATCCTTGGCTAGCCCGGATGGTTCTTATCCTTCATGCCAGGCCTTCACCG
dot-bracket secondary structure
.((((((((((.((((((.((.(((((....((((((.((((((((((((((...((((((((...(((...((((((((((...........)))))))
)))...)))...)))))))).)))))))))))).)).))))))))))).))..)))))).)))))))).)).
SIMILARITIES| miRBase zma-MIR169i: 0.000000009 PMRD zma-miR169i: 0.000000009 microPC miR169: 0.000002 | UniProt no hits RFAM MIR169_5: 0.0000002 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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