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ABOUT THIS RECORD
ID:
MNEST001750
species:
Panicum virgatum
miRNA family:
MIRf10
source:
miRNEST
Taxonomy by NCBI:
Panicum virgatum
Panicum
Paniceae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CTCAAAAGATTCGTCTCGTCG
miRNA*
GGGAGGTGAAAATTTTTGGGCG
mismatches:
3
bulges:
1
View larger
pre-miRNA
AGG
CTCAAAAGATTCGTCTCGTCG
TGTACATCTAAACTGTGTAATTAATTTTGTTATTTAATTACATTTAGTGCTTCATACATGTGTTCAAAG
GGGAGGT
GAAAATTTTTGGGCG
dot-bracket secondary structure
..(
((((((((.((((((((.((.
(((((((.((.((((.((((((((.........))))))))...))))......)).)))))..))..)
).)))))
)))..))))))))).
SIMILARITIES
miRBase
osa-MIR2124a
:
0.00009
PMRD
osa-miRf10518-akr
:
0.00002
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
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