ABOUT THIS RECORDspecies: Panicum virgatum
miRNA family: MIRf10
source: miRNEST
Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTCAAAAGATTCGTCTCGTCG miRNA* GGGAGTTGAAATTTTTTGGTA mismatches: 5 bulges: 0 |
pre-miRNA
AGGCTCAAAAGATTCGTCTCGTCGTGTACATCCAAACTGTGTAATTAGTTTTGTTATTTAATTACATTTAGTGCTTCATACATGTGTTCAAAGGGGAGTT
GAAATTTTTTGGTA
dot-bracket secondary structure
..(((.(((((.((((.(((.((.((.((((....((((.((((((((.........))))))))...))))...........)))).))..)).))).)
))).))))).))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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AGGCTCAAAAGATTCGTCTCGTCGTGTACATCCAAACTGTGTAATTAGTTTTGTTATTTAATTACATTTAGTGCTTCATACATGTGTTCAAAGGGGAGTT
GAAATTTTTTGGTA
dot-bracket secondary structure
..(((.(((((.((((.(((.((.((.((((....((((.((((((((.........))))))))...))))...........)))).))..)).))).)
))).))))).))).
SIMILARITIES| miRBase osa-MIR2124a: 0.00009 PMRD osa-miRf10518-akr: 0.00002 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
