ABOUT THIS RECORDspecies: Panicum virgatum
miRNA family: MIRf10
source: miRNEST
Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTCAAAAGATTCATCTCGCCG miRNA* TCGAGTTGAAAATTTTTGGGAA mismatches: 5 bulges: 1 |
pre-miRNA
CACTAATTAGGCTCAAAAGATTCATCTCGCCGTGTACATCGAAACTGTGTAATTATTTTTATTGTTTAACTATATTTATTACTCTATACATGTGTCCATA
CATGTGTCCAAAGGAAGATGCACAAATTTCGAGTTGAAAATTTTTGGGAACGCGTGCG
dot-bracket secondary structure
...........((((((((.((((.((((...(((.((((....((.((((((......(((.((...)).)))...)))))...(((((((((....))
)))))))..).))...)))).))).....)))).))))..))))))))..........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CACTAATTAGGCTCAAAAGATTCATCTCGCCGTGTACATCGAAACTGTGTAATTATTTTTATTGTTTAACTATATTTATTACTCTATACATGTGTCCATA
CATGTGTCCAAAGGAAGATGCACAAATTTCGAGTTGAAAATTTTTGGGAACGCGTGCG
dot-bracket secondary structure
...........((((((((.((((.((((...(((.((((....((.((((((......(((.((...)).)))...)))))...(((((((((....))
)))))))..).))...)))).))).....)))).))))..))))))))..........
SIMILARITIES| miRBase osa-MIR2124a: 0.000008 PMRD osa-miRf11301-akr: 0.0000005 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
