ABOUT THIS RECORDspecies: Panicum virgatum
miRNA family: MIRf89
source: miRNEST
Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCCTTTAGTCCCGGTTGGTAA miRNA* ACCAACCCGGACTAAAGGGTG mismatches: 3 bulges: 0 |
pre-miRNA
GCCAGCGGAGGGAGGGGCCTTTTCTCCCGGTTAGTGGCTCCATCCGGGACAAAAGGCCCAACCCTTTAGTCCCGGTTGGTAACACCAACCCGGACTAAAG
GGTGACCCTTTTGTCCCGATTGGTGGCACCAACCCGGACTAAAGGCCCCTCCACGTGATAGT
dot-bracket secondary structure
....(((...((((((((((((..(((.((((.(((.(((((..((((((((((((....((((((((((((.(((((((...))))))).)))))))))
)))...))))))))))))..))).))))).)))).)))..)))))))))))).)))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GCCAGCGGAGGGAGGGGCCTTTTCTCCCGGTTAGTGGCTCCATCCGGGACAAAAGGCCCAACCCTTTAGTCCCGGTTGGTAACACCAACCCGGACTAAAG
GGTGACCCTTTTGTCCCGATTGGTGGCACCAACCCGGACTAAAGGCCCCTCCACGTGATAGT
dot-bracket secondary structure
....(((...((((((((((((..(((.((((.(((.(((((..((((((((((((....((((((((((((.(((((((...))))))).)))))))))
)))...))))))))))))..))).))))).)))).)))..)))))))))))).)))......
SIMILARITIES| miRBase no hits PMRD osa-miRf12027-akr: 0.000000000009 microPC no hits | UniProt no hits RFAM MIR821: 0.0001 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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