ABOUT THIS RECORDspecies: Panicum virgatum
miRNA family: MIR171
source: miRNEST
Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGTGCCAATATC miRNA* TGTTGTCTCGGCTCACTCAGA mismatches: 4 bulges: 0 |
pre-miRNA
GGGATGAAATAGTAGCTATGATGTTGTCTCGGCTCACTCAGAGACCACGGGGTGGTGTGATGCCCGCGAGATCTCTGGTGCTTCTGATTGAGCCGTGCCA
ATATCTTAGTACTCTTTCATACG
dot-bracket secondary structure
...((((((.((((.(((.(((((((...(((((((.((((((((((.(((((..((((.....))))..)))))))))..)))))).)))))))...))
))))).))))))).))))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGGATGAAATAGTAGCTATGATGTTGTCTCGGCTCACTCAGAGACCACGGGGTGGTGTGATGCCCGCGAGATCTCTGGTGCTTCTGATTGAGCCGTGCCA
ATATCTTAGTACTCTTTCATACG
dot-bracket secondary structure
...((((((.((((.(((.(((((((...(((((((.((((((((((.(((((..((((.....))))..)))))))))..)))))).)))))))...))
))))).))))))).))))))...
SIMILARITIES| miRBase zma-MIR171e: 0.0000000000004 PMRD zma-miR171e: 0.0000000000004 microPC miR171: 0.0000004 | UniProt no hits RFAM MIR171_1: 0.000000000002 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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