ABOUT THIS RECORDspecies: Panicum virgatum
miRNA family: miR171e
source: miRNEST
Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTTGTCTCGGCTCACTCAGA miRNA* TGATTGAGCCGTGCCAATATC mismatches: 4 bulges: 0 |
pre-miRNA
GGGGATGAAATAGTAGCTATGATGTTGTCTCGGCTCACTCAGAGACCACGGGGTGGTGTGATGCCCGCGAGATCTCTGGTGCTTCTGATTGAGCCGTGCC
AATATCTTAGTACTCTTTCATACGT
dot-bracket secondary structure
....((((((.((((.(((.(((((((...(((((((.((((((((((.(((((..((((.....))))..)))))))))..)))))).)))))))...)
)))))).))))))).))))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGGGATGAAATAGTAGCTATGATGTTGTCTCGGCTCACTCAGAGACCACGGGGTGGTGTGATGCCCGCGAGATCTCTGGTGCTTCTGATTGAGCCGTGCC
AATATCTTAGTACTCTTTCATACGT
dot-bracket secondary structure
....((((((.((((.(((.(((((((...(((((((.((((((((((.(((((..((((.....))))..)))))))))..)))))).)))))))...)
)))))).))))))).))))))....
SIMILARITIES| miRBase zma-MIR171e: 0.0000000000004 PMRD zma-miR171e: 0.0000000000004 microPC miR171: 0.0000004 | UniProt no hits RFAM MIR171_1: 0.000000000002 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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