ABOUT THIS RECORDspecies: Panicum virgatum
miRNA family: MIR160
source: miRNEST
Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGTATGCCA miRNA* GCGTGCGAGGAGCCAAGCATG mismatches: 2 bulges: 0 |
pre-miRNA
GCTAGGGGATATGCCTGGCTCCCTGTATGCCACTCGCGTAGCTGCCAGCCAGCCCAGTCGAGCTCCCCCAGGATTAGCTGTGGGCGTGTACTACGTTGCT
GGCTCTACTGCGGATGGCGTGCGAGGAGCCAAGCATGACCTGATC
dot-bracket secondary structure
.....(((.(((((.(((((((.(((((((((.((((((((..((((((.(((..(((...((.(((.(((......))).))).))..)))..))))))
))).)))).)))).))))))))).))))))).))))).)))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GCTAGGGGATATGCCTGGCTCCCTGTATGCCACTCGCGTAGCTGCCAGCCAGCCCAGTCGAGCTCCCCCAGGATTAGCTGTGGGCGTGTACTACGTTGCT
GGCTCTACTGCGGATGGCGTGCGAGGAGCCAAGCATGACCTGATC
dot-bracket secondary structure
.....(((.(((((.(((((((.(((((((((.((((((((..((((((.(((..(((...((.(((.(((......))).))).))..)))..))))))
))).)))).)))).))))))))).))))))).))))).)))....
SIMILARITIES| miRBase osa-MIR160d: 8e-18 PMRD osa-miR160d: 8e-18 microPC miR160: 4e-66 | UniProt no hits RFAM mir-160: 0.00000000000004 | most similar mature miRNAs |
Identical with: miR160 from microPC (MNEST046291) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
