ABOUT THIS RECORDspecies: Panicum virgatum
miRNA family: miR166a
source: miRNEST
Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGAATGTTGTCCGGCTCGGGG miRNA* TCGGACCAGGCTTCATTCCCC mismatches: 4 bulges: 0 |
pre-miRNA
AGAGAGAGATCAGGGAGCCTTTTCGTCTTTGAGGGGAATGTTGTCCGGCTCGGGGGCGCCGCTCTTTCTCTGACCTGCCCCTTTCTCCTCCATCTCGCTC
TTCCTTTCTCTCTTGGAGATCAAGAGGAGATGGGCAGGGGTGAGAGGAGATGGGTGTAGATCTCGGACCAGGCTTCATTCCCCCCAAAAGGATGGGCTCC
CCATGCTCTCTGCC
dot-bracket secondary structure
..((((((....((((((((.(((...((((.((((((((..(((.((.(((((((((((.(((((.(((...(((((((...(((((((.(((((....
...............)))))...))))))).)))))))...))))))))...)))))...)))))).)).)))..)))))))).)))).))).)))))))
)....))))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGAGAGAGATCAGGGAGCCTTTTCGTCTTTGAGGGGAATGTTGTCCGGCTCGGGGGCGCCGCTCTTTCTCTGACCTGCCCCTTTCTCCTCCATCTCGCTC
TTCCTTTCTCTCTTGGAGATCAAGAGGAGATGGGCAGGGGTGAGAGGAGATGGGTGTAGATCTCGGACCAGGCTTCATTCCCCCCAAAAGGATGGGCTCC
CCATGCTCTCTGCC
dot-bracket secondary structure
..((((((....((((((((.(((...((((.((((((((..(((.((.(((((((((((.(((((.(((...(((((((...(((((((.(((((....
...............)))))...))))))).)))))))...))))))))...)))))...)))))).)).)))..)))))))).)))).))).)))))))
)....))))))...
SIMILARITIES| miRBase osa-MIR166b: 0.00000000000005 PMRD osa-miR166b: 0.00000000000005 microPC miR166: 0.0000000002 | UniProt no hits RFAM mir-166: 0.000000000004 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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