ABOUT THIS RECORDspecies: Panicum virgatum
miRNA family: miR166d
source: miRNEST
Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGAATGTTGTCTGGTTCAAGG miRNA* TCGGACCAGGCTTCATTCCCC mismatches: 3 bulges: 0 |
pre-miRNA
ATGAAGCTACTTGCTTCTGAGTGGAATGTTGTCTGGTTCAAGGTCTTGCTTTGCGATTTGAGGATGATCCATGCTTGCATGTGTAGTTTTTTTTCCTTGG
ATCTGCAAAATCTCGGACCAGGCTTCATTCCCCTTAGGAATAGCTTCAAAAT
dot-bracket secondary structure
.((((((((.....(((((((.((((((..(((((((((.((((.((((.....((((((((((..((.((((....)))).)).........)))))))
))).)))).)))).)))))))))..)))))).))))))).))))))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATGAAGCTACTTGCTTCTGAGTGGAATGTTGTCTGGTTCAAGGTCTTGCTTTGCGATTTGAGGATGATCCATGCTTGCATGTGTAGTTTTTTTTCCTTGG
ATCTGCAAAATCTCGGACCAGGCTTCATTCCCCTTAGGAATAGCTTCAAAAT
dot-bracket secondary structure
.((((((((.....(((((((.((((((..(((((((((.((((.((((.....((((((((((..((.((((....)))).)).........)))))))
))).)))).)))).)))))))))..)))))).))))))).))))))))....
SIMILARITIES| miRBase zma-MIR166b: 6e-28 PMRD zma-miR166b: 6e-28 microPC miR166: 3e-33 | UniProt no hits RFAM mir-166: 3e-27 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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