ABOUT THIS RECORDspecies: Panicum virgatum
miRNA family: MIR167
source: miRNEST
Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTA miRNA* GGTCATGCTGCGGCAGCCTCACT mismatches: 1 bulges: 2 |
pre-miRNA
GGAACTGCCCAAGGGAACGAGTGAAGCTGCCAGCATGATCTAGCTCTGAGTGATCACCGAGAGGAACGGAAGTTCGAGCTCTCATGGTCATGCCTTGCTA
GGTCATGCTGCGGCAGCCTCACTTCTTCCCGTCGTTGGGCA
dot-bracket secondary structure
.....((((((((((((.((((((.(((((((((((((((((((.....(((((((..(((((((((....))))...))))).))))))).....))))
)))))))))..)))))).)))))).)))))....)))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGAACTGCCCAAGGGAACGAGTGAAGCTGCCAGCATGATCTAGCTCTGAGTGATCACCGAGAGGAACGGAAGTTCGAGCTCTCATGGTCATGCCTTGCTA
GGTCATGCTGCGGCAGCCTCACTTCTTCCCGTCGTTGGGCA
dot-bracket secondary structure
.....((((((((((((.((((((.(((((((((((((((((((.....(((((((..(((((((((....))))...))))).))))))).....))))
)))))))))..)))))).)))))).)))))....)))))))
SIMILARITIES| miRBase zma-MIR167d: 2e-34 PMRD zma-miR167d: 2e-34 microPC miR167: 0.000002 | UniProt no hits RFAM MIR167_1: 4e-32 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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