ABOUT THIS RECORDspecies: Panicum virgatum
miRNA family: MIR167
source: miRNEST
Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTG miRNA* GATCATGCTTTGCAGTTTCATC mismatches: 1 bulges: 1 |
pre-miRNA
TATTTGGTGCATCCTCTAGGAGCTGAAGCTGCCAGCATGATCTGACGAGTGTTTAGCTAGTTGTCCACAGAAGTGATGACTGCTAACGATCAGATCATGC
TTTGCAGTTTCATCTGCTCGTGGGTGCACAACAG
dot-bracket secondary structure
......((((((((.....(((((((((((((.((((((((((((....((((.(((.(((((((.((....)))))))))))))))).)))))))))))
)..)))))))))...))))..)))))))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TATTTGGTGCATCCTCTAGGAGCTGAAGCTGCCAGCATGATCTGACGAGTGTTTAGCTAGTTGTCCACAGAAGTGATGACTGCTAACGATCAGATCATGC
TTTGCAGTTTCATCTGCTCGTGGGTGCACAACAG
dot-bracket secondary structure
......((((((((.....(((((((((((((.((((((((((((....((((.(((.(((((((.((....)))))))))))))))).)))))))))))
)..)))))))))...))))..)))))))).....
SIMILARITIES| miRBase bdi-MIR167c: 1e-16 PMRD sbi-miR167d: 0.000000000000007 microPC miR167: 0.00003 | UniProt no hits RFAM MIR167_1: 0.000000000008 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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