ABOUT THIS RECORDspecies: Panicum virgatum
miRNA family: MIR2504
source: miRNEST
Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGACTAAGTTTATAGAAAAA miRNA* TTTCTATAAACTTGGTCAAAG mismatches: 0 bulges: 0 |
pre-miRNA
CATGTCTAAATTTGACTAAGTTTATAGAAAAATATATTAACATCTATAATATCAAATATAGTGCACTTTGAAAATATATTTCATGGTCTATCTACTGAAA
CTAATTTGATATCGAAGATATTTATGCATTTTTCTATAAACTTGGTCAAAGCTAAAGAA
dot-bracket secondary structure
....(((...(((((((((((((((((((((((.(((.((.((((...(((((((((.(((((.(((.(((((.....))))).))).....)))))...
...)))))))))...)))).)).))).))))))))))))))))))))))).....))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CATGTCTAAATTTGACTAAGTTTATAGAAAAATATATTAACATCTATAATATCAAATATAGTGCACTTTGAAAATATATTTCATGGTCTATCTACTGAAA
CTAATTTGATATCGAAGATATTTATGCATTTTTCTATAAACTTGGTCAAAGCTAAAGAA
dot-bracket secondary structure
....(((...(((((((((((((((((((((((.(((.((.((((...(((((((((.(((((.(((.(((((.....))))).))).....)))))...
...)))))))))...)))).)).))).))))))))))))))))))))))).....))).
SIMILARITIES| miRBase ssp-MIR437b: 0.0000000000001 PMRD sbi-miR437f: 0.000000002 microPC miR437: 0.0000005 | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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