ABOUT THIS RECORDspecies: Panicum virgatum
miRNA family: MIR827
source: miRNEST
Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTAGATGACCATCAGCAAACA miRNA* TTTTGTTGGTGGTCATCTAACC mismatches: 0 bulges: 1 |
pre-miRNA
GCTCCGAACTTGTTTTGTTGGTGGTCATCTAACCATGCTCCGATCCGGTGCATGGATCATGGATTGCGGTCATGACCCATGACCGTCATGGACTGATCAT
GGTCTTGCGTGCGCGGTTAGATGACCATCAGCAAACATGTTCATGA
dot-bracket secondary structure
.....((((.(((((.((((((((((((((((((.(((.(((...)))(((..(((((((((((.(((((((((...))))))))).)).......))))
))))).))).))).))))))))))))))))))))))).))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GCTCCGAACTTGTTTTGTTGGTGGTCATCTAACCATGCTCCGATCCGGTGCATGGATCATGGATTGCGGTCATGACCCATGACCGTCATGGACTGATCAT
GGTCTTGCGTGCGCGGTTAGATGACCATCAGCAAACATGTTCATGA
dot-bracket secondary structure
.....((((.(((((.((((((((((((((((((.(((.(((...)))(((..(((((((((((.(((((((((...))))))))).)).......))))
))))).))).))).))))))))))))))))))))))).))))....
SIMILARITIES| miRBase bdi-MIR827: 0.000000007 PMRD osa-miR827b: 0.000002 microPC miR827: 0.000002 | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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