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ABOUT THIS RECORD

ID: MNEST001802
species: Panicum virgatum
miRNA family: MIR399
source: miRNEST

Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCCAAAGGAGAATTGCCC

miRNA*
 GTATATCTCCTTTGGCACG

mismatches: 2
bulges: 0
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pre-miRNA
 CATGAATTACAGGGTATATCTCCTTTGGCACGGAGGCACGCAACCATCCGTAGGTATGTTAATGGATGGTGGCAAGCTGCTGGCTTGGAAGATGCAGCAT
AATAGCCGTGCGTGCCAAAGGAGAATTGCCCTGCGATTCAC

dot-bracket secondary structure
..((((((.(((((((..((((((((((((((..(((..((.(((((((((..........))))))))).))..(((((....((....)).)))))..
....)))...))))))))))))))..))))))).)))))).


SIMILARITIES
miRBase osa-MIR399c: 0.0000000000005

PMRD osa-miR399c: 0.0000000000005

microPC miR399: 4e-66		UniProt no hits

RFAM mir-399: 0.000000000009		most similar mature miRNAs

Identical with: miR399 from microPC (MNEST046133)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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