ABOUT THIS RECORDspecies: Panicum virgatum
miRNA family: MIR2011
source: miRNEST
Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCAGTGGCATATGCAAGTCT miRNA* GATGTACATGCTCGCTGCGGT mismatches: 2 bulges: 2 |
pre-miRNA
TCGATTGGAGCTGCAGTGGCATATGCAAGTCTGTCGAGAGGATCAAGGATGTACATGCTCGCTGCGGTGAAGGAGA
dot-bracket secondary structure
((..((...(((((((((((((.((((..(((.((....))....))).)))).)))).)))))))))..))..))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TCGATTGGAGCTGCAGTGGCATATGCAAGTCTGTCGAGAGGATCAAGGATGTACATGCTCGCTGCGGTGAAGGAGA
dot-bracket secondary structure
((..((...(((((((((((((.((((..(((.((....))....))).)))).)))).)))))))))..))..))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q8LEJ9|B3GT4_ARATH: 0.000003 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
