ABOUT THIS RECORDspecies: Panicum virgatum
miRNA family: MIR1439
source: miRNEST
Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATTTGGAACAGAGGGAGTACT miRNA* TACTCCCTCCGTTCCATGTAG mismatches: 5 bulges: 0 |
pre-miRNA
GCGTATGAATTGTACTCCCTCCGTTCCATGTAGGTGATTTTGGCTTTTCTAGGTTCATAGATATTATTATGCATCTAGACAAACACTATATCTAGATGCA
TAGTAAAAATTATGTAGCTAAAAAAGCCAAAACGATCTACAATTTGGAAATTTGGAACAGAGGGAGTACTAAAGAACTC
dot-bracket secondary structure
...........((((((((((.(((((((((((((..(((((((((((.(((...(((((...((((((((((((((((...........))))))))))
))))))...)))))...))).)))))))))))..)))))))...........)))))).))))))))))..........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GCGTATGAATTGTACTCCCTCCGTTCCATGTAGGTGATTTTGGCTTTTCTAGGTTCATAGATATTATTATGCATCTAGACAAACACTATATCTAGATGCA
TAGTAAAAATTATGTAGCTAAAAAAGCCAAAACGATCTACAATTTGGAAATTTGGAACAGAGGGAGTACTAAAGAACTC
dot-bracket secondary structure
...........((((((((((.(((((((((((((..(((((((((((.(((...(((((...((((((((((((((((...........))))))))))
))))))...)))))...))).)))))))))))..)))))))...........)))))).))))))))))..........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM MIR1122: 0.00001 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
