ABOUT THIS RECORDspecies: Panicum virgatum
miRNA family: MIR444
source: miRNEST
Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGTGGCTTTCTTGCAAGTTG miRNA* CTTTGCCAGAGCTACAAGT mismatches: 4 bulges: 2 |
pre-miRNA
GAAGATCATACTTGTGGCTTTCTTGCAAGTTGTGCAGTTGTTGCCTCAAGCTTGCTGCCTCCCTTTGCCAGAGCTACAAGTAAAATAAG
dot-bracket secondary structure
........(((((((((((((...(((((....(((((.(((......)))..))))).....))))).))))))))))))).......
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GAAGATCATACTTGTGGCTTTCTTGCAAGTTGTGCAGTTGTTGCCTCAAGCTTGCTGCCTCCCTTTGCCAGAGCTACAAGTAAAATAAG
dot-bracket secondary structure
........(((((((((((((...(((((....(((((.(((......)))..))))).....))))).))))))))))))).......
SIMILARITIES| miRBase tae-MIR444: 1e-24 PMRD tae-miR444: 1e-24 microPC miR444: 2e-20 | UniProt sp|Q6Z6W2|MAD57_ORYSJ: 0.00006 RFAM MIR444: 1e-31 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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