ABOUT THIS RECORDspecies: Panicum virgatum
miRNA family: MIR444
source: miRNEST
Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCAGTTGTTGCCTCAAGCTT miRNA* GCATGAGGCAGGAACTGCATT mismatches: 2 bulges: 0 |
pre-miRNA
GGTGGCACCAAGCATGAGGCAGGAACTGCATTACTTGCAAGGAAGTCACAACTCACAAAATCAATTGGAAGATCATACTTGTGGCTTTCTTGCAAGTTGT
GCAGTTGTTGCCTCAAGCTTGCTGCCTC
dot-bracket secondary structure
...((((.(((((.((((((((.((((((((.(((((((((((((((((((.........((.....)).........))))))))))))))))))).))
)))))).)))))))).))))).))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGTGGCACCAAGCATGAGGCAGGAACTGCATTACTTGCAAGGAAGTCACAACTCACAAAATCAATTGGAAGATCATACTTGTGGCTTTCTTGCAAGTTGT
GCAGTTGTTGCCTCAAGCTTGCTGCCTC
dot-bracket secondary structure
...((((.(((((.((((((((.((((((((.(((((((((((((((((((.........((.....)).........))))))))))))))))))).))
)))))).)))))))).))))).))))..
SIMILARITIES| miRBase ssp-MIR444b: 6e-37 PMRD osa-miR444f: 2e-18 microPC miR444: 1e-28 | UniProt no hits RFAM MIR444: 2e-31 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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