ABOUT THIS RECORDspecies: Panicum virgatum
miRNA family: MIR444
source: miRNEST
Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCAGTTGTTGTCTCAAGCTT miRNA* GCTAGAGGCAGCAACTGCATA mismatches: 1 bulges: 0 |
pre-miRNA
CGGCGGTGACAAGCTAGAGGCAGCAACTGCATATCTTGCAAGAAAATTGGTTTTCAGACCATACCTATGATTTTCTTGCAAGTTGTGCAGTTGTTGTCTC
AAGCTTGCTGCCTCC
dot-bracket secondary structure
.((((((...(((((.(((((((((((((((((.((((((((((((((((((....)))))........))))))))))))).)))))))))))))))))
.)))))))))))...
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CGGCGGTGACAAGCTAGAGGCAGCAACTGCATATCTTGCAAGAAAATTGGTTTTCAGACCATACCTATGATTTTCTTGCAAGTTGTGCAGTTGTTGTCTC
AAGCTTGCTGCCTCC
dot-bracket secondary structure
.((((((...(((((.(((((((((((((((((.((((((((((((((((((....)))))........))))))))))))).)))))))))))))))))
.)))))))))))...
SIMILARITIES| miRBase ssp-MIR444c: 4e-47 PMRD pvi-miR444: 7e-61 microPC miR444: 2e-45 | UniProt no hits RFAM MIR444: 4e-47 | most similar mature miRNAs |
Identical with: pvi-miR444 from PMRD (MNEST054376) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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