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ABOUT THIS RECORD
ID:
MNEST001849
species:
Panicum virgatum
miRNA family:
MIR159
source:
miRNEST
Taxonomy by NCBI:
Panicum virgatum
Panicum
Paniceae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTTGGATTGAAGGGAGCTCTG
miRNA*
GAGCTCCTATCATTCCAATGA
mismatches:
3
bulges:
0
View larger
pre-miRNA
GGAAGCG
GAGCTCCTATCATTCCAATGA
AGGGTCCTTTCGCTGGGTTGGTACAGCTGCTCGTTCATGGTTCCCACTATCCTATCTCATCTCCTGGAGGGT
TTATCTCAGAGAGAGAGGGAGAGATGAGTGGCCTGGTGTTTGGCTTGAGATAGGCTTTGTGGCTTGCATGACCGAGGAGCTGCACCGTTCCCTTGCTGGC
CGCTC
TTTGGATTGAAGGGAGCTCTG
CGTC
dot-bracket secondary structure
....(((
((((((((.(((.(((((.((
..((.((....((.(((.((((.(((((.((((.(((((....((((...(((((((((...((.((.((((
(((((((.............)))))))...))))....)).))..)))))))))....))))....))))).)))).))))).))))..)))..)).)))
)..))
.))))).))).))))))))))
)...
SIMILARITIES
miRBase
sbi-MIR159
:
7e-32
PMRD
pgl-miR159
:
1e-36
microPC
miR319
:
6e-20
UniProt
no hits
RFAM
MIR159: 1e-30
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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