ABOUT THIS RECORDspecies: Panicum virgatum
miRNA family: miR159a
source: miRNEST
Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GAGCTCCTATCATTCCAATGA miRNA* TTTGGATTGAAGGGAGCTCTG mismatches: 3 bulges: 0 |
pre-miRNA
TGGAAGCGGAGCTCCTATCATTCCAATGAAGGGTCCTTTCGCTGGGTTGGTACAGCTGCTCGTTCATGGTTCCCACTATCCTATCTCATCTCCTGGAGGG
TTTATCTCAGAGAGAGAGGGAGAGATGAGTGGCCTGGTGTTTGGCTTGAGATAGGCTTTGTGGCTTGCATGACCGAGGAGCTGCACCGTTCCCTTGCTGG
CCGCTCTTTGGATTGAAGGGAGCTCTGCGTCT
dot-bracket secondary structure
.(((.(((((((((((.(((.(((((.((..((.((....((.(((.((((.(((((.((((.(((((....((((...(((((((((...((.((.(((
((((((((.............)))))))...))))....)).))..)))))))))....))))....))))).)))).))))).))))..)))..)).))
))..)).))))).))).))))))))))).)))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGGAAGCGGAGCTCCTATCATTCCAATGAAGGGTCCTTTCGCTGGGTTGGTACAGCTGCTCGTTCATGGTTCCCACTATCCTATCTCATCTCCTGGAGGG
TTTATCTCAGAGAGAGAGGGAGAGATGAGTGGCCTGGTGTTTGGCTTGAGATAGGCTTTGTGGCTTGCATGACCGAGGAGCTGCACCGTTCCCTTGCTGG
CCGCTCTTTGGATTGAAGGGAGCTCTGCGTCT
dot-bracket secondary structure
.(((.(((((((((((.(((.(((((.((..((.((....((.(((.((((.(((((.((((.(((((....((((...(((((((((...((.((.(((
((((((((.............)))))))...))))....)).))..)))))))))....))))....))))).)))).))))).))))..)))..)).))
))..)).))))).))).))))))))))).)))
SIMILARITIES| miRBase sbi-MIR159: 7e-32 PMRD pgl-miR159: 1e-36 microPC miR319: 6e-20 | UniProt no hits RFAM MIR159: 1e-30 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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