ABOUT THIS RECORDspecies: Panicum virgatum
miRNA family: MIRf117
source: miRNEST
Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCTGCCGCAGCCGCTGCCGTG miRNA* CGGCTGCAGCTAGCGGGCAGCCA mismatches: 2 bulges: 2 |
pre-miRNA
ATCAAGGCCACGGCTGCAGCTAGCGGGCAGCCAGCAGCCATACAAGGCACTGGTCCTCGTTCTAAGCGCCCCGGCCGCGAACCCTATTCCTTGTTCTTGA
ATCTCTCATCCCCAATCCTACACACCAGCTGAGAGAGGAGAGAGAATTAATTCGGGAGATCTAGAGAGAGAGAACGGGAGGAGCGAGGTGCGCGCGTGGA
AGGGGGGAGAATAGAATGTTCCCTTCCAAGAAGGCCACTAGCGTCGCTGCCGCAGCCGCTGCCGTGAGCTCAAAT
dot-bracket secondary structure
.....(((((((((.((.(((.((((.((((..((.(((......)))..(((((.((.(((((.((((.((...(((........(((((.((((((..
.(((((.((((((..((((................))))..(((......)))))).)))..)))))..)))))))))))..))).)).))))...))))
)((((((.((((.....))))))))))..)).)))))...))...))))))))))).)).)))))).))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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ATCAAGGCCACGGCTGCAGCTAGCGGGCAGCCAGCAGCCATACAAGGCACTGGTCCTCGTTCTAAGCGCCCCGGCCGCGAACCCTATTCCTTGTTCTTGA
ATCTCTCATCCCCAATCCTACACACCAGCTGAGAGAGGAGAGAGAATTAATTCGGGAGATCTAGAGAGAGAGAACGGGAGGAGCGAGGTGCGCGCGTGGA
AGGGGGGAGAATAGAATGTTCCCTTCCAAGAAGGCCACTAGCGTCGCTGCCGCAGCCGCTGCCGTGAGCTCAAAT
dot-bracket secondary structure
.....(((((((((.((.(((.((((.((((..((.(((......)))..(((((.((.(((((.((((.((...(((........(((((.((((((..
.(((((.((((((..((((................))))..(((......)))))).)))..)))))..)))))))))))..))).)).))))...))))
)((((((.((((.....))))))))))..)).)))))...))...))))))))))).)).)))))).))).....
SIMILARITIES| miRBase ath-MIR404: 0.0009 PMRD ath-miRf10010-akr: 0.0009 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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