ABOUT THIS RECORDspecies: Papaver somniferum
miRNA family: MIRf345
source: miRNEST
Taxonomy by NCBI:
Papaver somniferum Papaver Papaveraceae Ranunculales stem eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CACCAAAGGCCTCTGCCCTTC miRNA* AGGGCAGAGCTTTTGGTTTT mismatches: 1 bulges: 1 |
pre-miRNA
TTGTGAGGCCCCAATTCTTGACTGGAGGGGACACCAAAGGCCTCTGCCCTTCCATCCCTTGGATAGAGAGGGAGGGCAGAGCTTTTGGTTTTTCATGTTG
TCAAAGAGTTGAACAATGGT
dot-bracket secondary structure
.(....)....(((((((((((.....((((.(((((((((.(((((((((((((((...)))).....)))))))))))))))))))).)))).....)
)).)))))))).........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
TTGTGAGGCCCCAATTCTTGACTGGAGGGGACACCAAAGGCCTCTGCCCTTCCATCCCTTGGATAGAGAGGGAGGGCAGAGCTTTTGGTTTTTCATGTTG
TCAAAGAGTTGAACAATGGT
dot-bracket secondary structure
.(....)....(((((((((((.....((((.(((((((((.(((((((((((((((...)))).....)))))))))))))))))))).)))).....)
)).)))))))).........
SIMILARITIES| miRBase no hits PMRD ptc-miRf12309-akr: 5e-22 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
