ABOUT THIS RECORDspecies: Parthenium argentatum
miRNA family: MIR319
source: miRNEST
Taxonomy by NCBI:
Parthenium argentatum Parthenium Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGACTGAAGGGAGCTCCCT miRNA* AGAGCTTTCTTCGGTCCACTC mismatches: 2 bulges: 0 |
pre-miRNA
TAAGAGAAAGAGAGCTTTCTTCGGTCCACTCACGGGTTACGATAAGATATCAATTAGCTGCCGACTCATTCACCCAAATACTAGGCCAAAATCTGTTTAT
AGTGCTTAGTAAATGATTGAATGATGCGGGAGACAAATTGGATCTTAAGTGTCCTGTATTTGGACTGAAGGGAGCTCCCTTATATTT
dot-bracket secondary structure
.......(((.(((((((((((((((((...(((((.(((..((((((.((((((..((.(((..(((((((..((..((((((((......(((....)
)).))))))))..))..)))))))..))).))...)))))))))))).))).)))))...))))))))))))))))).)))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TAAGAGAAAGAGAGCTTTCTTCGGTCCACTCACGGGTTACGATAAGATATCAATTAGCTGCCGACTCATTCACCCAAATACTAGGCCAAAATCTGTTTAT
AGTGCTTAGTAAATGATTGAATGATGCGGGAGACAAATTGGATCTTAAGTGTCCTGTATTTGGACTGAAGGGAGCTCCCTTATATTT
dot-bracket secondary structure
.......(((.(((((((((((((((((...(((((.(((..((((((.((((((..((.(((..(((((((..((..((((((((......(((....)
)).))))))))..))..)))))))..))).))...)))))))))))).))).)))))...))))))))))))))))).)))......
SIMILARITIES| miRBase vvi-MIR319c: 3e-24 PMRD vvi-miR319c: 3e-24 microPC miR319: 5e-23 | UniProt no hits RFAM MIR159: 5e-23 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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