ABOUT THIS RECORDspecies: Parthenium argentatum
miRNA family: MIR164
source: miRNEST
Taxonomy by NCBI:
Parthenium argentatum Parthenium Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGAAGCAGGGTACGTGCA miRNA* CATGTGCCCGTCTTCTCCATC mismatches: 3 bulges: 0 |
pre-miRNA
AACAAGATCTATGACGTAGGTGCTGATCAAAATGGAGAAGCAGGGTACGTGCATTACTAACTCATCATGAGAACCTTGGGTCAAGGTTCCTAACCATGTAA
CCTTGGGTTAAGGTTCATGTTTGTGACTAAGGATCGTGTACATGTGTGTTAGTGATTCATGTGCCCGTCTTCTCCATCATGACCACCTACACCTTAACAT
CAAAGA
dot-bracket secondary structure
)......(((.(((.(((((((.((.(((..(((((((((..(((((((((.(((((((((....(((..(((((((((.((((((((...........))
)))))).))))))))).(((.(((((.......))))).))).))).))))))))).)))))))))..)))))))))..))).))....)))))..)).)
)).)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AACAAGATCTATGACGTAGGTGCTGATCAAAATGGAGAAGCAGGGTACGTGCATTACTAACTCATCATGAGAACCTTGGGTCAAGGTTCCTAACCATGTAA
CCTTGGGTTAAGGTTCATGTTTGTGACTAAGGATCGTGTACATGTGTGTTAGTGATTCATGTGCCCGTCTTCTCCATCATGACCACCTACACCTTAACAT
CAAAGA
dot-bracket secondary structure
)......(((.(((.(((((((.((.(((..(((((((((..(((((((((.(((((((((....(((..(((((((((.((((((((...........))
)))))).))))))))).(((.(((((.......))))).))).))).))))))))).)))))))))..)))))))))..))).))....)))))..)).)
)).)))
SIMILARITIES| miRBase ptc-MIR164e: 7.0E-10 PMRD ptc-miRf11320-akr: 7.0E-10 microPC miR164: 3.0E-9 | UniProt no hits RFAM 4MIR164: 1.0E-8 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
