ABOUT THIS RECORDspecies: Paullinia cupana var. sorbilis
miRNA family: MIR164
source: miRNEST
Taxonomy by NCBI:
Paullinia cupana var. sorbilis Paullinia cupana Paullinia Sapindaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGAAGCAGGGCACGTGCA miRNA* CATGTGCCCCTCTTCCCCATC mismatches: 5 bulges: 0 |
pre-miRNA
GTGTGTAGAGCAAGATGGAGAAGCAGGGCACGTGCATTACTAACTCACCAACCATAAAAAACACTGACACATAAATTCAATTGATTGAGTTAGTTCTTCA
TGTGCCCCTCTTCCCCATCATGAACCACTCC
dot-bracket secondary structure
(((.((....((.(((((.((((..(((((((((....(((((((((.(((.............................)))..)))))))))....))
)))))))..)))).))))).)).)))))...
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTGTGTAGAGCAAGATGGAGAAGCAGGGCACGTGCATTACTAACTCACCAACCATAAAAAACACTGACACATAAATTCAATTGATTGAGTTAGTTCTTCA
TGTGCCCCTCTTCCCCATCATGAACCACTCC
dot-bracket secondary structure
(((.((....((.(((((.((((..(((((((((....(((((((((.(((.............................)))..)))))))))....))
)))))))..)))).))))).)).)))))...
SIMILARITIES| miRBase ctr-MIR164: 3e-20 PMRD ptc-miRf11320-akr: 5e-16 microPC miR164: 5e-53 | UniProt no hits RFAM MIR164: 5e-16 | most similar mature miRNAs |
Identical with: miR164 from microPC (MNEST046528) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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