ABOUT THIS RECORDspecies: Phaseolus acutifolius
miRNA family: MIRf198
source: miRNEST
Taxonomy by NCBI:
Phaseolus acutifolius Phaseolus Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGGTTGTTCTTCTACAGGAT miRNA* CCATTTAGAATAGCCATGA mismatches: 4 bulges: 2 |
pre-miRNA
ACCAATTTCATATGGTTGTTCTTCTACAGGATTTTTCTCTTCCATGCATGCTTTTATCCAATCCAATTTTAGAACCCATCGTCCATTTAGAATAGCCATG
AGAACTTTC
dot-bracket secondary structure
......(((.((((((((((((......((((................................................))))....))))))))))))
.))).....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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ACCAATTTCATATGGTTGTTCTTCTACAGGATTTTTCTCTTCCATGCATGCTTTTATCCAATCCAATTTTAGAACCCATCGTCCATTTAGAATAGCCATG
AGAACTTTC
dot-bracket secondary structure
......(((.((((((((((((......((((................................................))))....))))))))))))
.))).....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q8RXD4|BRCA1_ARATH: 0.0000007 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
