ABOUT THIS RECORDspecies: Phaseolus coccineus
miRNA family: MIR167
source: miRNEST
Taxonomy by NCBI:
Phaseolus coccineus Phaseolus Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGATCATGTGGCAGTTTCACC miRNA* TGAAGCTGCCAGCATGATCTTA mismatches: 1 bulges: 1 |
pre-miRNA
AATTATCTAACATCATGCACCACTACCAGTTGAAGCTGCCAGCATGATCTTAACTTCCCTCACTTGGTTGAGGAGAGATCAGATCATGTGGCAGTTTCAC
CTAGTTGTTGGCCGCATGAACCCTAGTT
dot-bracket secondary structure
............((((((.((((.((.((.(((((((((((.((((((((...(((.(((((......))))).)))...))))))))))))))))))).
)).)).).)))..)))))).........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
AATTATCTAACATCATGCACCACTACCAGTTGAAGCTGCCAGCATGATCTTAACTTCCCTCACTTGGTTGAGGAGAGATCAGATCATGTGGCAGTTTCAC
CTAGTTGTTGGCCGCATGAACCCTAGTT
dot-bracket secondary structure
............((((((.((((.((.((.(((((((((((.((((((((...(((.(((((......))))).)))...))))))))))))))))))).
)).)).).)))..)))))).........
SIMILARITIES| miRBase gma-MIR167f: 1e-37 PMRD pco-miR167: 2e-33 microPC miR167: 2e-33 | UniProt no hits RFAM MIR167_1: 6e-28 | most similar mature miRNAs |
Identical with: pco-miR167 from PMRD (MNEST051324) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
