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ABOUT THIS RECORD
ID:
MNEST001927
species:
Picea engelmannii x Picea glauca
miRNA family:
MIR169
source:
miRNEST
Taxonomy by NCBI:
Picea engelmannii x Picea glauca
Picea
Pinaceae
Coniferales
Coniferopsida
Coniferophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CAGCCAAGAATGACTTGCCCG
miRNA*
GGTAGGTTGTTCTTGGCAAAG
mismatches:
2
bulges:
0
View larger
pre-miRNA
ATTCGTGTAGGCTCTTGCATGTAGAGGCCGAGAGTGTTACT
CAGCCAAGAATGACTTGCCCG
CATACTGTTGTGGATTATGGTTCCACATACACATTGCA
GTTTTGTG
GGTAGGTTGTTCTTGGCAAAG
CATCGCTCTCTTCCTTTCATGCCAGGCCCCGCATGAGG
dot-bracket secondary structure
.(((((((.((.(((.(((((.(((((..(((((((...((
..(((((((((((((((((((
((.(((((.(((...((((......))))..))).)))
))..))))
)))))))))))))))))..))
...)))))))..)))))))))).))).)).))))))).
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
miR169
:
3e-42
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
Identical with:
miR169
from microPC (
MNEST045769
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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