ABOUT THIS RECORDspecies: Picea engelmannii x Picea glauca
miRNA family: MIR397
source: miRNEST
Taxonomy by NCBI:
Picea engelmannii x Picea glauca Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCATTGAGTGCAGCGTTGACG miRNA* TTAACCCTGCACTCAATAGTA mismatches: 2 bulges: 0 |
pre-miRNA
CTTGCTAGCCGTGGCAACCACATCATTGAGTGCAGCGTTGACGATAGAAATTCCACCAATAGATTTGATAATATCTATCTATTTGTGGAATGCCATTGAT
ATTGTTAACCCTGCACTCAATAGTATGTTTGCCAATGGCTCCAT
dot-bracket secondary structure
......((((.((((((.((.((.(((((((((((.((((((((((...(((((((.(((((((..(((...))).))))))).)))))))........)
))))))))).))))))))))).)).)).))))))..))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTTGCTAGCCGTGGCAACCACATCATTGAGTGCAGCGTTGACGATAGAAATTCCACCAATAGATTTGATAATATCTATCTATTTGTGGAATGCCATTGAT
ATTGTTAACCCTGCACTCAATAGTATGTTTGCCAATGGCTCCAT
dot-bracket secondary structure
......((((.((((((.((.((.(((((((((((.((((((((((...(((((((.(((((((..(((...))).))))))).)))))))........)
))))))))).))))))))))).)).)).))))))..))))....
SIMILARITIES| miRBase pab-MIR397: 4e-72 PMRD vvi-miR397b: 0.00003 microPC miR397: 3e-51 | UniProt no hits RFAM MIR397: 0.0005 | most similar mature miRNAs |
Identical with: miR397 from microPC (MNEST045153) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
