miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST001928
species: Picea engelmannii x Picea glauca
miRNA family: MIR397
source: miRNEST

Taxonomy by NCBI:
Picea engelmannii x Picea glauca Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCATTGAGTGCAGCGTTGACG

miRNA*
TTAACCCTGCACTCAATAGTA

mismatches: 2
bulges: 0

View larger
pre-miRNA
CTTGCTAGCCGTGGCAACCACATCATTGAGTGCAGCGTTGACGATAGAAATTCCACCAATAGATTTGATAATATCTATCTATTTGTGGAATGCCATTGAT
ATTGTTAACCCTGCACTCAATAGTATGTTTGCCAATGGCTCCAT


dot-bracket secondary structure
......((((.((((((.((.((.(((((((((((.((((((((((...(((((((.(((((((..(((...))).))))))).)))))))........)
))))))))).))))))))))).)).)).))))))..))))....



SIMILARITIES
miRBase pab-MIR397: 4e-72

PMRD vvi-miR397b: 0.00003

microPC miR397: 3e-51
UniProt no hits

RFAM MIR397: 0.0005
most similar mature miRNAs

Identical with: miR397 from microPC (MNEST045153)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;