ABOUT THIS RECORDspecies: Picea engelmannii x Picea glauca
miRNA family: MIRf240
source: miRNEST
Taxonomy by NCBI:
Picea engelmannii x Picea glauca Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGTTCAAGAAAGCCGTGGAAA miRNA* CCCACGGCTTTCTTGAGCTTC mismatches: 1 bulges: 0 |
pre-miRNA
CTTTAATAATTTCCCACGGCTTTCTTGAGCTTCTTATGCGGATCTGTTGGCGGTGAGATTGACCGCCAACACTGCCGATCGGGAAGTTCAAGAAAGCCGT
GGAAAAATATGACA
dot-bracket secondary structure
.....(((.(((.((((((((((((((((((((((...(((...((((((((((.......))))))))))...)))...))))))))))))))))))))
)).))).)))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTTTAATAATTTCCCACGGCTTTCTTGAGCTTCTTATGCGGATCTGTTGGCGGTGAGATTGACCGCCAACACTGCCGATCGGGAAGTTCAAGAAAGCCGT
GGAAAAATATGACA
dot-bracket secondary structure
.....(((.(((.((((((((((((((((((((((...(((...((((((((((.......))))))))))...)))...))))))))))))))))))))
)).))).)))....
SIMILARITIES| miRBase pab-MIR396c: 5e-34 PMRD ptc-miRf10517-akr: 0.000006 microPC miR396: 1e-28 | UniProt no hits RFAM MIR396: 0.000002 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
