ABOUT THIS RECORDspecies: Picea engelmannii x Picea glauca
miRNA family: MIRf419
source: miRNEST
Taxonomy by NCBI:
Picea engelmannii x Picea glauca Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCCACGGCTTTCTTGAGCTTC miRNA* AGTTCAAGAAAGCCGTGGAA mismatches: 0 bulges: 1 |
pre-miRNA
GCCTTTAATATTCTTCCCACGGCTTTCTTGAGCTTCGTATGCGGATCTGTTAGCGGTGCGATCTGTCGCCAACACTCCCGATCGGGAAGTTCAAGAAAGCC
GTGGAAAAATATGAGAG
dot-bracket secondary structure
).((((.(((((.((((.((((((((((((((((((.....(((...((((.((((.........)))).))))...))).....))))))))))))))))
)))))).))))).))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GCCTTTAATATTCTTCCCACGGCTTTCTTGAGCTTCGTATGCGGATCTGTTAGCGGTGCGATCTGTCGCCAACACTCCCGATCGGGAAGTTCAAGAAAGCC
GTGGAAAAATATGAGAG
dot-bracket secondary structure
).((((.(((((.((((.((((((((((((((((((.....(((...((((.((((.........)))).))))...))).....))))))))))))))))
)))))).))))).))))
SIMILARITIES| miRBase pab-MIR396c: 5.0E-62 PMRD ptc-miRf10517-akr: 6.0E-6 microPC miR396: 1.0E-47 | UniProt no hits RFAM 6MIR396: 2.0E-6 | most similar mature miRNAs |
Identical with: pab-MIR396c from miRBase (MNEST039381), miR396 from microPC |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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