ABOUT THIS RECORDspecies: Picea glauca
miRNA family: MIR1310
source: miRNEST
Taxonomy by NCBI:
Picea glauca Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGCATCGGGGGCGTAACGCCC miRNA* GCTGCTCCCCTTGTTTCTC mismatches: 4 bulges: 2 |
pre-miRNA
TCTCTTCGACATGGCTGCTCCCCTTGTTTCTCTTGTCAATGATTAGAGGCATCGGGGGCGTAACGCCCTCGACCTATT
dot-bracket secondary structure
.....((((...((((((.(((((.((.(((((.(((...))).))))).)).))))).)))..))).))))......
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TCTCTTCGACATGGCTGCTCCCCTTGTTTCTCTTGTCAATGATTAGAGGCATCGGGGGCGTAACGCCCTCGACCTATT
dot-bracket secondary structure
.....((((...((((((.(((((.((.(((((.(((...))).))))).)).))))).)))..))).))))......
SIMILARITIES| miRBase pta-MIR1310: 0.0000002 PMRD pta-miR1310: 0.0000002 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
