ABOUT THIS RECORDspecies: Picea glauca
miRNA family: MIR3709
source: miRNEST
Taxonomy by NCBI:
Picea glauca Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCAGATGCTTTAAATTCCCGA miRNA* GGGATTTAAAGCATTTGAAG mismatches: 0 bulges: 1 |
pre-miRNA
AGCAGCATCGTGTGGCATAAATTCAAGAATTTCAGATGCTTTAAATTCCCGACAGATTCTTGCGATGACCAAATGGATTTCGGGATTTAAAGCATTTGAA
GCTCTGGATTTATGCCAAACAGGAGCGCA
dot-bracket secondary structure
.((.((.((((.(((((((((((((.((.(((((((((((((((((.(((((..(((((...............))))))))))))))))))))))))))
).))))))))))))))).)).)).)))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGCAGCATCGTGTGGCATAAATTCAAGAATTTCAGATGCTTTAAATTCCCGACAGATTCTTGCGATGACCAAATGGATTTCGGGATTTAAAGCATTTGAA
GCTCTGGATTTATGCCAAACAGGAGCGCA
dot-bracket secondary structure
.((.((.((((.(((((((((((((.((.(((((((((((((((((.(((((..(((((...............))))))))))))))))))))))))))
).))))))))))))))).)).)).)))).
SIMILARITIES| miRBase pab-MIR3709a: 2e-49 PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: pab-MIR3709a from miRBase (MNEST039410) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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