ABOUT THIS RECORDspecies: Picea glauca
miRNA family: MIR1448
source: miRNEST
Taxonomy by NCBI:
Picea glauca Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTTCCAACGCCTCCCATGCC miRNA* CTTTGGAGGATTTGGAAAGGC mismatches: 5 bulges: 0 |
pre-miRNA
TCGCGGGGTTTCACAGGGACGCTGTGCACTTTGGTCTTTAGGCTTTGGAGGATTTGGAAAGGCATAGTCATTATTTTTACCGAGGATCATCGATTTTCTC
TGATCCTTTCCAACGCCTCCCATGCCTATAGTCCTCATTGCACATCCCTGTTATTCCCACCCGCT
dot-bracket secondary structure
..(((((.....(((((((...((((((....((.((.(((((...(((((..(((((((((..(((..............(((((((...))))))).)
))..)))))))))..)))))...))))).)).))....)))))))))))))........))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCGCGGGGTTTCACAGGGACGCTGTGCACTTTGGTCTTTAGGCTTTGGAGGATTTGGAAAGGCATAGTCATTATTTTTACCGAGGATCATCGATTTTCTC
TGATCCTTTCCAACGCCTCCCATGCCTATAGTCCTCATTGCACATCCCTGTTATTCCCACCCGCT
dot-bracket secondary structure
..(((((.....(((((((...((((((....((.((.(((((...(((((..(((((((((..(((..............(((((((...))))))).)
))..)))))))))..)))))...))))).)).))....)))))))))))))........))))).
SIMILARITIES| miRBase no hits PMRD no hits microPC miR1448: 5e-38 | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: miR1448 from microPC (MNEST044991) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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