ABOUT THIS RECORDspecies: Picea glauca
miRNA family: MIR166
source: miRNEST
Taxonomy by NCBI:
Picea glauca Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCTT miRNA* GGAATGAAACCTGGGTCAAGA mismatches: 4 bulges: 0 |
pre-miRNA
AATTTCAGAGTTGGGATATCGGGAATGAAACCTGGGTCAAGATGATTTGAAGGCAGGCTGTTGAAGATTATCTCGGACCAGGCTTCATTCCTTGCATCCA
AACTCTTTAAG
dot-bracket secondary structure
......((((((.((((...(((((((((.(((((.((.(((((((((...((((...))))..))))))))).)).))))).)))))))))...)))).
)))))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AATTTCAGAGTTGGGATATCGGGAATGAAACCTGGGTCAAGATGATTTGAAGGCAGGCTGTTGAAGATTATCTCGGACCAGGCTTCATTCCTTGCATCCA
AACTCTTTAAG
dot-bracket secondary structure
......((((((.((((...(((((((((.(((((.((.(((((((((...((((...))))..))))))))).)).))))).)))))))))...)))).
)))))).....
SIMILARITIES| miRBase pab-MIR166b: 3e-57 PMRD pga-miR166: 5e-34 microPC miR166: 0.00002 | UniProt no hits RFAM mir-166: 0.0000004 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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