ABOUT THIS RECORDspecies: Picea glauca
miRNA family: MIR482
source: miRNEST
Taxonomy by NCBI:
Picea glauca Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTTCTCTATTCCTCCCATTC miRNA* TTGGGAGGATAGGAGAAGGCT mismatches: 3 bulges: 0 |
pre-miRNA
ATGTGGATGGAAGTCTTGAGGATTGGGAGGATAGGAGAAGGCTGTTTGCTTAATTCTCAGTTGAAACCTGATTAGTCTTCTCTATTCCTCCCATTCCTAT
TGCCTCCATCACACA
dot-bracket secondary structure
.((((((((((.((....((((.((((((((..(((((((((((.(((.(((((.....)))))....))).)))))))))))..)))))))).))))..
.)).)))))).))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATGTGGATGGAAGTCTTGAGGATTGGGAGGATAGGAGAAGGCTGTTTGCTTAATTCTCAGTTGAAACCTGATTAGTCTTCTCTATTCCTCCCATTCCTAT
TGCCTCCATCACACA
dot-bracket secondary structure
.((((((((((.((....((((.((((((((..(((((((((((.(((.(((((.....)))))....))).)))))))))))..)))))))).))))..
.)).)))))).))))
SIMILARITIES| miRBase pab-MIR482b: 2e-58 PMRD pta-miR482c: 0.00009 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
