miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



ABOUT THIS RECORD

ID: MNEST001960
species: Picea glauca
miRNA family: MIR482
source: miRNEST

Taxonomy by NCBI:
Picea glauca Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCTTCCCTACTCCTCCCATTCC

miRNA*
 AGTGGAAGGATAGGGTAAGACT

mismatches: 1
bulges: 2
View larger
pre-miRNA
 TTGGTTGTGAGAAAGGGATGTGTATGGATGAAGTTTGGAGGAGTGGAAGGATAGGGTAAGACTGCGGTTAAGTGAGTCTGCTTCAATAATTCTTTGCTCT
AATCTCACCAGTCTTCCCTACTCCTCCCATTCCTGTTGCCTTCATCACAGTTCCCTTCCCAACGCAACACA

dot-bracket secondary structure
...((((((...((((((..(((...(((((((.....((((((((.(((((((((.(((((((.......(((((...((..............))...
...))))))))))))))))).)))).)))))))).....))))))))))..)))))).....))))))...


SIMILARITIES
miRBase pab-MIR482a: 2e-62

PMRD pta-miR482c: 0.00000004

microPC miR482: 9e-46		UniProt no hits

RFAM no hits		most similar mature miRNAs

Identical with: pab-MIR482a from miRBase (MNEST039383)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;