ABOUT THIS RECORDspecies: Picea glauca
miRNA family: MIR169
source: miRNEST
Taxonomy by NCBI:
Picea glauca Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGCCAAGGATGACTTGCCAGC miRNA* TGGCAAGTATCCTTGGCTAC mismatches: 0 bulges: 1 |
pre-miRNA
ATCATGTAGGGTCTTGCATGGAGGGCGGCAGCGAGTGATGGAGCCAAGGATGACTTGCCAGCATCTATCACTCAGCAGGAATCTGAAGGGGTTTTGTACG
ACGTCATCATATGCAGGGGAGAGTTGGCAAGTATCCTTGGCTACATATCTCGGAGTGCTCCTCATGCGAGACCTCAGATGAG
dot-bracket secondary structure
.((((...(((((((((((((.(((((....((((..(((.((((((((((.((((((((((.(((....(((.(((......(((.((.(((......)
)).)).)))..))).))).))))))))))))))))))))))).)))..))))...))))).)))))))))))))...)))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATCATGTAGGGTCTTGCATGGAGGGCGGCAGCGAGTGATGGAGCCAAGGATGACTTGCCAGCATCTATCACTCAGCAGGAATCTGAAGGGGTTTTGTACG
ACGTCATCATATGCAGGGGAGAGTTGGCAAGTATCCTTGGCTACATATCTCGGAGTGCTCCTCATGCGAGACCTCAGATGAG
dot-bracket secondary structure
.((((...(((((((((((((.(((((....((((..(((.((((((((((.((((((((((.(((....(((.(((......(((.((.(((......)
)).)).)))..))).))).))))))))))))))))))))))).)))..))))...))))).)))))))))))))...)))).
SIMILARITIES| miRBase gma-MIR169a: 0.000009 PMRD gma-miR169a: 0.000009 microPC miR169: 7e-53 | UniProt no hits RFAM MIR169_2: 0.0007 | most similar mature miRNAs |
Identical with: miR169 from microPC (MNEST045443) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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