ABOUT THIS RECORDspecies: Picea glauca
miRNA family: miR396b
source: miRNEST
Taxonomy by NCBI:
Picea glauca Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCTCAAGAAAGCTGTGGGAAA miRNA* TTCCACAGCTTTCTTGAACTA mismatches: 3 bulges: 0 |
pre-miRNA
CGGCGATGAATCCCGCCATGCTCTTCCACAGCTTTCTTGAACTAAGAGTCGATCGGATCCGGTCAGTTCAGAGCTCAAGAAAGCTGTGGGAAAACATGGG
CGGATTCGATGAT
dot-bracket secondary structure
...((.(((((((..(((((...(((((((((((((((((.((..((((.(((((....))))).))))..)).)))))))))))))))))...))))).
.))))))).))..
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CGGCGATGAATCCCGCCATGCTCTTCCACAGCTTTCTTGAACTAAGAGTCGATCGGATCCGGTCAGTTCAGAGCTCAAGAAAGCTGTGGGAAAACATGGG
CGGATTCGATGAT
dot-bracket secondary structure
...((.(((((((..(((((...(((((((((((((((((.((..((((.(((((....))))).))))..)).)))))))))))))))))...))))).
.))))))).))..
SIMILARITIES| miRBase pab-MIR396a: 6e-52 PMRD ath-miR396b: 0.00000002 microPC miR396: 8e-33 | UniProt no hits RFAM MIR396: 0.0000001 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
