ABOUT THIS RECORDspecies: Picea glauca
miRNA family: MIR396
source: miRNEST
Taxonomy by NCBI:
Picea glauca Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACTA miRNA* GCTCAAGAAAGCTGTGGGAAA mismatches: 2 bulges: 0 |
pre-miRNA
GCGATGAATCCCGCCATGCTCTTCCACAGCTTTCTTGAACTAAGAGTCGATCGGATCCGGTCAGTTCAGAGCTCAAGAAAGCTGTGGGAAAACATGGGCG
GATTCGATG
dot-bracket secondary structure
....(((((((..(((((...(((((((((((((((((.((..((((.(((((....))))).))))..)).)))))))))))))))))...)))))..)
))))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
GCGATGAATCCCGCCATGCTCTTCCACAGCTTTCTTGAACTAAGAGTCGATCGGATCCGGTCAGTTCAGAGCTCAAGAAAGCTGTGGGAAAACATGGGCG
GATTCGATG
dot-bracket secondary structure
....(((((((..(((((...(((((((((((((((((.((..((((.(((((....))))).))))..)).)))))))))))))))))...)))))..)
))))))...
SIMILARITIES| miRBase pab-MIR396a: 6e-52 PMRD ath-miR396b: 0.00000002 microPC miR396: 7e-33 | UniProt no hits RFAM MIR396: 0.0000001 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
