ABOUT THIS RECORDspecies: Picea sitchensis
miRNA family: MIR3709
source: miRNEST
Taxonomy by NCBI:
Picea sitchensis Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTAAATGCCTTAAATTCCCGA miRNA* GGGATTTAAAGCATTTGAAGT mismatches: 1 bulges: 1 |
pre-miRNA
CGACTGGCTTAAATCCAAGAACTTTAAATGCCTTAAATTCCCGATAAATTCAGGCGATGACCGAATATATTTCGGGATTTAAAGCATTTGAAGTTCTGGAT
TTATCCCAAAC
dot-bracket secondary structure
)...(((..((((((((.(((((((((((((.((((((.(((((((.((((.((......)))))).))..))))))))))).))))))))))))))))))
)))..)))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CGACTGGCTTAAATCCAAGAACTTTAAATGCCTTAAATTCCCGATAAATTCAGGCGATGACCGAATATATTTCGGGATTTAAAGCATTTGAAGTTCTGGAT
TTATCCCAAAC
dot-bracket secondary structure
)...(((..((((((((.(((((((((((((.((((((.(((((((.((((.((......)))))).))..))))))))))).))))))))))))))))))
)))..)))...
SIMILARITIES| miRBase pab-MIR3709b: 1.0E-49 PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: pab-MIR3709b from miRBase (MNEST039411) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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