ABOUT THIS RECORDspecies: Picea sitchensis
miRNA family: miR482d
source: miRNEST
Taxonomy by NCBI:
Picea sitchensis Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGCTTGCGAGGATAGGAAAAA miRNA* TTTCCCACTCCTCCCAAGCCCA mismatches: 3 bulges: 1 |
pre-miRNA
TCGCAAGGGGAGAAAGGCCAAAGGCTTGCGAGGATAGGAAAAACTCGTGTGGTGTATTTTCTCACTCACCGATCTACAGTTTTTCCCACTCCTCCCAAGCC
CATGGCCTTGCCTTCCCTGT
dot-bracket secondary structure
)....(((((((.(((((((..((((((.(((((..(((((((((.((((((((............)))))...))))))))))))...))))).))))))
..)))))))..)))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCGCAAGGGGAGAAAGGCCAAAGGCTTGCGAGGATAGGAAAAACTCGTGTGGTGTATTTTCTCACTCACCGATCTACAGTTTTTCCCACTCCTCCCAAGCC
CATGGCCTTGCCTTCCCTGT
dot-bracket secondary structure
)....(((((((.(((((((..((((((.(((((..(((((((((.((((((((............)))))...))))))))))))...))))).))))))
..)))))))..)))))))..
SIMILARITIES| miRBase pab-MIR482d: 4.0E-50 PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: pab-MIR482d from miRBase (MNEST039386) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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