ABOUT THIS RECORDspecies: Picea sitchensis
miRNA family: MIRf493
source: miRNEST
Taxonomy by NCBI:
Picea sitchensis Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGGACCAGGCTTCATTCCCCT miRNA* GGGACTGTTGTCTGGCTCGAG mismatches: 5 bulges: 0 |
pre-miRNA
ATGATCATTGGTTATTCGTTGTGGGGACTGTTGTCTGGCTCGAGGTCATTCAGATTCATATACTAATTGATTATCAGACTGAGTGATGCCGGACCAGGCTT
CATTCCCCTCAACTCCAAACCAAAAATA
dot-bracket secondary structure
)......((((((....((((.(((((.((..((((((.(((..(((((((((.((.(((...........))).)).)))))))))..))).))))))..
)).))))).))))....)))))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
ATGATCATTGGTTATTCGTTGTGGGGACTGTTGTCTGGCTCGAGGTCATTCAGATTCATATACTAATTGATTATCAGACTGAGTGATGCCGGACCAGGCTT
CATTCCCCTCAACTCCAAACCAAAAATA
dot-bracket secondary structure
)......((((((....((((.(((((.((..((((((.(((..(((((((((.((.(((...........))).)).)))))))))..))).))))))..
)).))))).))))....)))))).....
SIMILARITIES| miRBase bna-MIR166b: 6.0E-9 PMRD bna-miR166b: 6.0E-9 microPC miR166: 2.0E-5 | UniProt no hits RFAM 6mir-166: 5.0E-7 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
