ABOUT THIS RECORDspecies: Picea sitchensis
miRNA family: miR950-5p
source: miRNEST
Taxonomy by NCBI:
Picea sitchensis Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCACATCTGGGCCACGATGGTT miRNA* CCATGGTGCCCCAGATGAGAAG mismatches: 3 bulges: 0 |
pre-miRNA
TAAGAGGTTTTGGAGGTGATCTTCACATCTGGGCCACGATGGTTTATTTTTCTTCGTTTATTTATCATAAACCATGGTGCCCCAGATGAGAAGAGCACCTT
CGCCTCCGTT
dot-bracket secondary structure
)..(((((...(((((((.(((((.((((((((.(((.(((((((((...................))))))))).))).)))))))).))))).))))))
))))))....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TAAGAGGTTTTGGAGGTGATCTTCACATCTGGGCCACGATGGTTTATTTTTCTTCGTTTATTTATCATAAACCATGGTGCCCCAGATGAGAAGAGCACCTT
CGCCTCCGTT
dot-bracket secondary structure
)..(((((...(((((((.(((((.((((((((.(((.(((((((((...................))))))))).))).)))))))).))))).))))))
))))))....
SIMILARITIES| miRBase pab-MIR950: 6.0E-58 PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: pab-MIR950 from miRBase (MNEST039389) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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